[gmx-users] topology of Alpha d-mannopyranosyl (1-6) alpha d-mannopyranose

[Mark Abraham]

parichita parichita wrote:
> Hi again.....
>   Thank you for your help....
>  I found my MANA in the ffG53a5.rtp and i can prepare
> the .gro and .top file from pdb2gmx.
> Now , i am facing another problem after solvation of
> my solute when i run the minimization the 1-6 linkage
> was broken ......
> please help me out ........

"linkage was broken" doesn't help us help you. Please describe in detail 
what you observed and why you think it was wrong.

Mark