[gmx-users] AFM Pulling and com motion

[Zhou Bo]

Hi GXM Users,

 

   I'm trying to execute some AFM Pulling. I followed the pull code tutorial
from GMX WORKSHOP 2007, and I found there is no specific to com motion in
mdp, so the default is "comm-mode=Linear" and "comm-grps=System". I was
confused about it as I believed we should not stopcm when doing AFM Pulling
because of the external force. Does it problematic to stopcm when doing AFM
Pulling?

Thanks!

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