[gmx-users] make_ndx

[Naser, Md Abu]

Hi XAvier,

"Single out" I mean  pick up only the side chain bonded with alpha carbon atom and
put them in a group using make_ndx.

With regards,
  

Abu Naser 

School Of Life Sciences 
Heriot-Watt University 
Edinburgh EH14 4AS 
Email: mn2 at hw.ac.uk
Phone: +44(0)1314518265 
Fax : +44(0) 131 451 3009 


 



-----Original Message-----
From: gmx-users-bounces at gromacs.org on behalf of Xavier Periole
Sent: Wed 26/09/2007 8:42 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] make_ndx
 
On Wed, 26 Sep 2007 20:08:06 +0100
  "Naser, Md Abu" <mn2 at hw.ac.uk> wrote:
> Hi All User,
> 
> Is there anyway I can single out side chain of alpha carbon atom using 
>make_ndx?

What do you mean by "single out"
and with "side chain of alpha carbon" ?

> 
> Thanks in advance.
> 
> Abu Naser 
> 
> School Of Life Sciences 
> Heriot-Watt University 
> Edinburgh EH14 4AS 
> Email: mn2 at hw.ac.uk
> Phone: +44(0)1314518265 
>Fax : +44(0) 131 451 3009 
> 
> 
> 
> 

-----------------------------------------------------
XAvier Periole - PhD

1- Institute of Molecular Assemblies
      City University of New York - USA
2- Molecular Dynamics-Group
      University of Groningen - The Netherlands
http://md.chem.rug.nl/~periole
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