[gmx-users] G_hbond and periodicity

[Tsjerk Wassenaar]

Hi Tang Jiaowei,

g_hbond takes periodicity into account, like most tools do. Do note
that this doesn't work if you've performed rotational transformations
(lsq-fitting).

Cheers,

Tsjerk

On 9/28/07, tangxuan <tangxuan82 at gmail.com> wrote:
> Hi all,
>    Does periodic boundary affect the calculation of hydrogen bond if my
> protein is not in one box? What about other calculations?
>
> Thank you,
>
>
> Tang jiaowei
>
>
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
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