[gmx-users] difference between pbc = full and pbc =xy

[Berk Hess]

Hi,

All options are described in share/html/online/mdp_opt.html
pbc=xy is what you would (probably) guess pbc in x and y only.
pbc=full is replaced by periodic_molecules, such that it can also
be used with pbc=xy.

Berk.


> From: zhoubo81 at gmail.com
> To: gmx-users at gromacs.org
> Date: Thu, 3 Apr 2008 11:55:22 +0800
> Subject: [gmx-users] difference between pbc = full and pbc =xy
> 
> Dear all,
> 
> I want to simulate an infinite inorganic surface in gmx 3.3.3 recently. As I
> know, pbc = full is required for the bonded interaction on the edges. When I
> check the newly CVS version, a new set named "pbc = xy" is implemented. I
> wonder if there is something different between the two sets. Thanks in
> advance. 
> 
> 
> 
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