[gmx-users] angle analysis

[serdar durdagi]

you mah try to use VMD progam for trajectory analysis. In this program, you can visuluaze the change of bond angle through the simulation.
   
  

Zuzana Benkova <zuzana.benkova at student.kuleuven.be> schrieb:
  Dear GMX users,
I want to analyse th ebond angle. I have used

mk_angndx -s md1.tpr -n angle.ndx

to prepare an index for g_angle.

After
g_angle -f md1.xtc -s md1.tpr -n angle.ndx

I have obtained

Software inconsistency error:
Not supported in get_stx_coordnum
Most likely this is a trivial question and I did some stupid mistake 
but I would be thankful for help. Thank you in advance
Zuzana
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