[gmx-users] How to heat a system and equilibrate it?

[Mark Abraham]

shuai lu wrote:
> Hello all,
>  
> What does it mean by saying "the system was slowly heated to 310 K and 
> equilibrated for 150 ps at 310 K to allow full relaxation of the 
> system"? How to heat a system and equilibrate it?

It will be good for you to start with some tutorial material (see 
GROMACS wiki and website), and/or background reading on molecular 
dynamics simulations, and then to come back with some more focussed 
questions.

Mark