[gmx-users] Error in topology file
s lal badshah
shahbiochemist at yahoo.com
Wed Apr 16 12:11:42 CEST 2008
Dear Experts,
Hi ! I am doing simulation of cholera toxin, one with GTP( guanosine triphosphate) and other without it.The without GTP MD simulation I have done, now I started the other and when I used the pdb2gmx command on pdb file it says:
Program pdb2gmx, VERSION 3.3.1
Source code file: resall.c, line: 438
Fatal error:
Residue 'GTP' not found in residue topology database
Earlier this already happen so I left that and was started the pdb having GTP removed but this time it is necessary for me.Should I use prodrg server or some thing else.
Hoping for guidance.
Lal badshah.
Send instant messages to your online friends http://uk.messenger.yahoo.com
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20080416/165b6c64/attachment.html>
More information about the gromacs.org_gmx-users
mailing list