[gmx-users] GTP in topology

[Justin A. Lemkul]

Quoting s lal badshah <shahbiochemist at yahoo.com>:

> Hi All,
> I have taken the GTP topology from PRODRG server but now how can I make a
> connection with my original topology file: As in Errors of Gromacs it is
> mentioned
>
> ==> find a topology file for the residue / molecule and include as a .itp
> file,
>
> what does it means? I am using OPLS/aa force field.

You do realize, of course, that the PRODRG output is for use with a Gromos-based
force field, right?  Which one will depend on which version of the server you
use...

-Justin

> Regards,
> Lal badshah.
>
>
> SYED LAL BADSHAH
> M.Phil Scholar
> NCE in Physical Chemistry,
> University of Peshawar.
> NWFP,Pakistan.
> Cell # 03349060632.
>  Send instant messages to your online friends http://uk.messenger.yahoo.com



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Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul at vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/

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