[gmx-users] hydrogen bonds of peptide with lipids

Justin A. Lemkul jalemkul at vt.edu
Thu Apr 17 12:34:08 CEST 2008

Quoting maria goranovic <mariagoranovic at gmail.com>:

> Dear All,
> Where are the donor and acceptor atoms defined for the g_hbond analysis ? I
> was trying to calculate h-bonds between a peptide and a popc bilayer, but
> there are no acceptor or donors listed for POPC. How can one change this ?

Have a look at g_hbond -h


> Sincerely,
> -Maria
> --
> Maria G.
> Technical University of Denmark
> Copenhagen


Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul at vt.edu | (540) 231-9080


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