[gmx-users] hydrogen bonds of peptide with lipids

[Justin A. Lemkul]

Quoting maria goranovic <mariagoranovic at gmail.com>:

> Dear All,
>
> Where are the donor and acceptor atoms defined for the g_hbond analysis ? I
> was trying to calculate h-bonds between a peptide and a popc bilayer, but
> there are no acceptor or donors listed for POPC. How can one change this ?

Have a look at g_hbond -h

-Justin

>
> Sincerely,
> -Maria
>
> --
> Maria G.
> Technical University of Denmark
> Copenhagen
>



========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul at vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/

========================================