[gmx-users] DCCM

[Ramya Cherukupalli]

Dear all,

    In some of the papers i read a cross-correlation analysis is meant to
calculate the associated movements over the simulation for residues.

    A value of Cij is calculated which when +ve means that the given
pair of atoms are moving together in the same direction and the same phase.

    But i'm not sure of calculation of Cij. It would be helpful if anyone
who has performed DCCM analysis can guide me of the procedure needed
to follow.

Thanks in adv.
Ramya.

> madam,
>              what do you mean by cross correlation analysis if you explain
> i can say  tools available
>
>
>
>
> Ramya Cherukupalli <ramya at research.iiit.ac.in> wrote:
> Dear all,
>
>      I am presently working on MD of Lipases. I want to perform the
> Dynamic Cross correlation analysis of the same. I have read some
> papers..But i am still not clear on the procedure to be carried out.
> Can anyone please help me out.
>
> Thanks in adv.
> Ramya.
>
>
>
>
>
>
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
>
>
> ---------------------------------
>  Unlimited freedom, unlimited storage. Get it now
>
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php


*