[gmx-users] Choose of force fields of ethanol and B-DNA with 15 base pairs

Yang Ye leafyoung at yahoo.com
Mon Apr 21 16:14:44 CEST 2008


Mark Abraham wrote:
> Collins Nganou wrote:
>> Dear all.
>>
>> greetings. I need to know what force fields can I Choose to run:
>>
>> 1- ethanol vibrational mode.
>> 2- B-DNA with 15 base pairs
>
> Start with a literature search. You'll need to do one later in order 
> to defend your choice. "Some person on a mailing list recommended it" 
> doesn't cut it...
I agree with Mark.

While for 2), there are ports from AMBER (ffamber) and CHARMM (from 
"Contributed software" on Gromacs website) available for Gromacs.
>
> Mark
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