[gmx-users] grompp error, invalid line in .gro file
Andreas Kring
akring at fys.ku.dk
Tue Apr 22 12:12:17 CEST 2008
Hello all.
I'm trying to simulate an argon liquid. The OPLS-AA force field is used
with the files from /usr/local/gromacs/share/gromacs/top. But I get an
error when I run
$ grompp -f NVT.mdp -c Ar.gro -p Ar.top
-------------------------------------------------------
Program grompp, VERSION 3.3.3
Source code file: confio.c, line: 709
Fatal error:
Invalid line in Ar.gro for atom 1:
1Argon Ar 1 0.0 0.0 0.0
-------------------------------------------------------
An ideas on what can be wrong? My argon .top file and .gro file can be
seen below.
Kind regards
Andreas
----------------------
Ar.top
----------------------
; Topology file for Ar
; Parameter level
#include "ffoplsaa.itp"
; #define _FF_OPLS
; #define _FF_OPLSAA
; [defaults]
; #include "ffoplsaanb.itp"
; [atomtypes]
; #include "ffoplsaabon.itp"
; [bondtypes]
; [constrainttypes]
; [angletypes]
; [dihedraltypes]
; Molecule level
[ moleculetype ]
; molname nrexcl
Argon 1
[ atoms ]
; id at_type res_nr res_name at_name cg_nr charge
1 opls_097 1 Argon Ar 1 0.0
; System level
[ system ]
Argon liquid
[ molecules ]
Argon 2048
---------------------------------
Ar.gro
---------------------------------
fcc lattice of argon atoms
2048
1Argon Ar 1 0.0 0.0 0.0
2Argon Ar 2 0.283835 0.283835 0.0
...
2047Argon Ar 2047 4.257525 3.97369 4.257525
2048Argon Ar 2048 3.97369 4.257525 4.257525
4.54136 4.54136 4.54136
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