[gmx-users] A question

[Erik Marklund]

I suggest reading the following: 
http://wiki.gromacs.org/index.php/Errors#Residue_.27XXX.27_not_found_in_residue_topology_database

/Erik

samad ahadian skrev:
> Hello,
>
> I am new user of Gromacs. I did a pdb2gmx command on my pdb file. I got an error below:
>
> "Residue 'XXX' not found in residue topology database"
>
> I know that I blindly made my pdb file using Materials Studio 4.2. Let me know there is a special software to make a pdb file? Thank you in advance for your response.
>
> Regards,
>
> Samad
>
>
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-- 
-----------------------------------------------
Erik Marklund, PhD student
Laboratory of Molecular Biophysics,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 4537        fax: +46 18 511 755
erikm at xray.bmc.uu.se    http://xray.bmc.uu.se/molbiophys