[gmx-users] problem running parallel simulation regarding the md log file

Berk Hess gmx3 at hotmail.com
Fri Apr 25 09:20:53 CEST 2008

Hi,It might be that your job does not have write permission.Probably something has to be changed in your job scriptor the file system permissions on your system.Ask your system administrator.Berk.Date: Thu, 24 Apr 2008 19:20:00 -0700From: prism_dead at yahoo.comTo: gmx-users at gromacs.orgSubject: [gmx-users] problem running parallel simulation regarding the md	log file

Dear GROMACS users and developers,I've encountered a problem when tying to do a parallel simulation for my protein structure.  I tried so many times but the problem still with the log file. Can someone help me out here please?. I changed the log filename, but still got this error:-------------------------------------------------------Program mdrun_mpi, VERSION 3.3.2Source code file: futil.c, line: 313File input/output error:tg1_md.log-------------------------------------------------------"You Own the Sun" (Throwing Muses)Halting program mdrun_mpigcq#111: "You Own the Sun" (Throwing Muses)[0] MPI Abort by user Aborting program ![0] Aborting program!p0_2442:  p4_error: : -1    p4_error: latest
 msg from perror: No such file or directory Muhammad Alif Mohammad LatifDepartment of ChemistryFaculty of ScienceUniversiti Putra Malaysia43400 UPM Serdang, SelangorMALAYSIA

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