[gmx-users] question

David van der Spoel spoel at xray.bmc.uu.se
Sun Apr 27 10:30:05 CEST 2008

shahrbanoo karbalaee wrote:
> Dear
> I donot get your answer.I have a peptide with NH2 bond in C terminal.Can 
> I run MD with gromacs generally ?.or It  shall know   that as modified 
> residue.
> when I run it  I have this error: I donot find c for 14 residue.(it is 
> NH2 in c terminal).
chapter 5 in the manual. you have to edit rtp files depending on force 
> -- 
> sh-karbalaee
> ------------------------------------------------------------------------
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

More information about the gromacs.org_gmx-users mailing list