[gmx-users] pdb2gmx -inter automatised ?

[Christian Fufezan]

Dear gmx users,

I am new to MD and working my way through some tutorials. I saw that  
pdb2gmx has the "-inter" flag which is used to specify which  
conformers/protonation stats should be used.

Is there a way in which this can be automatised ?

For example, lets say I have a list.txt

....
HIS A 105 -> HISB
....

and I would like to use that list for all runs to be used.

Thanks in Advance

Christian Fufezan