[gmx-users] Re: about size of group of monomers vs time

[Vitaly Chaban]

> Hi users
>
> I am modeling the aggregation of an amphoteric molecule in aqueous media, and to analyze the trajectories,
> I want to plot the number of monomers in the aggregates vs time and the kind of groups because in some trajectories i have dimers and monomers, or dimers and trimers and so on
>
> Is there any program in Gromacs to do this?
> thanks in advance
>
> ROGELIO HERNANDEZ
>

See trajectory analysis section. There are some ways to do what you want.


-- 
Vitaly V. Chaban
School of Chemistry
National University of Kharkiv
Svoboda sq., 4, Kharkiv 61077, Ukraine
email: chaban at univer.kharkov.ua
skype: vvchaban