[gmx-users] not running on higher no of nodes
Anupam Nath Jha
anupam at mbu.iisc.ernet.in
Thu Aug 14 08:35:28 CEST 2008
Dear all
My job is running successfully on 32no of nodes (gromacs-3.3.3) of Rocks 4.3, 33
node cluster ( Dual processor, Quad core Intel Xeon: Total 264 cores ), but if I
am submitting same job for 64or higher no of nodes. it's coming without doing
anything.
this is my command line:
grompp_mpi -np 64 -f run.mdp -p topol.top -c pr.gro -o run.tpr
mpirun -machinefile ./machfile1 -np 64 mdrun_mpi -v -deffnm run
what's going wrong.
regards
anupam
--
Science is facts; just as houses are made of stone, so is science is made of
facts; but a pile of stones is not a house, and a collection of facts is not
necessarily science.
Anupam Nath Jha
Ph. D. Student
Saraswathi Vishveshwara Lab
Molecular Biophysics Unit
IISc,Bangalore-560012
Karnataka
Ph. no.-22932611
More information about the gromacs.org_gmx-users
mailing list