[gmx-users] addition of all hydrogens in pdb2gmx

[sridhar acharya]

Hi,

The manual says, pdb2gmx adds all hydrogens, including those for carbons.
But I could not find the output gro file to contain all the hydrogens 
(especially for carbons) satisfying all the valencies. Is there any 
option that I may be missing?

thanks,
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