[gmx-users] Error in trjconv

M.Parthiban parthiban at ncbs.res.in
Mon Aug 18 06:12:18 CEST 2008


Hi

I am encountering an error in file conversion from .trr file to .xtc file
using trjconv command, and this is for a dimer and a ligand bound complex
simulation. can you help me in knowing or to rectify this error which
follows.,

Thank you in advance

Parthiban
=======================================================================
Will write xtc: Compressed trajectory (portable xdr format)
trn version: GMX_trn_file (single precision)
Reading frame       0 time    0.000
Setting output precision to 0.001 (nm)

Back Off! I just backed up dimer_md.xtc to ./#dimer_md.xtc.1#
 ->  frame   1680 time  840.000        ->  frame   1600 time  800.000
trjconv_mpi:18542 terminated with signal 11 at PC=32380ec1ee
SP=7fbffed110.  Backtrace:
/lib64/tls/libc.so.6(xdr_string+0xee)[0x32380ec1ee]
trjconv_mpi[0x421dc0]
trjconv_mpi[0x448d97]
trjconv_mpi(read_next_frame+0x47a)[0x44b3fa]
trjconv_mpi(gmx_trjconv+0x21db)[0x40ec6b]
/lib64/tls/libc.so.6(__libc_start_main+0xdb)[0x323801c3fb]
trjconv_mpi[0x40c77a]
========================================================================








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