[gmx-users] g_hbond output analysis

Florian Haberl Florian.Haberl at chemie.uni-erlangen.de
Tue Aug 26 12:13:55 CEST 2008


On Tuesday, 26. August 2008, parthiban at ncbs.res.in wrote:
> hi
> i used the -num option for g_hbond run. since i new to gromacs i cannot
> able to interpret the output form. it comes in 3 columns with the first
> column indicating the frame, i dont know about the remaining two columns

if you use

g_hbond -h it tells you also if you have the legend inside the file (do not 
select -noxvgr)

2: Hydrogen bonds
3: Pairs within 0.35nm (depends on your select cutoff radius)

> Kindly suggest
> Parthiban & sundar
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 Florian Haberl                        
 Universitaet Erlangen/ Nuernberg
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 Telephone:  	+49(0) − 9131 − 85 26573
 Mailto: florian.haberl AT chemie.uni-erlangen.de

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