[gmx-users] g_hbond output analysis

[parthiban at ncbs.res.in]

> Message: 1
> Date: Tue, 26 Aug 2008 15:38:56 +0530 (IST)
> From: parthiban at ncbs.res.in
> Subject: [gmx-users] g_hbond output analysis
> To: gmx-users at gromacs.org
> Message-ID: <56573.192.168.1.1.1219745336.squirrel at mail.ncbs.res.in>
> Content-Type: text/plain;charset=iso-8859-1
>
> hi
>
> i used the -num option for g_hbond run. since i new to gromacs i cannot
> able to interpret the output form. it comes in 3 columns with the first
> column indicating the frame, i dont know about the remaining two columns
>
> Kindly suggest
>
> Parthiban & sundar
>
>
>
> ------------------------------
>
> Message: 2
> Date: Tue, 26 Aug 2008 12:13:55 +0200
> From: Florian Haberl <Florian.Haberl at chemie.uni-erlangen.de>
> Subject: Re: [gmx-users] g_hbond output analysis
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> Message-ID: <200808261213.57421.Florian.Haberl at chemie.uni-erlangen.de>
> Content-Type: text/plain;	charset="utf-8"
>
> Hi,
>
> On Tuesday, 26. August 2008, parthiban at ncbs.res.in wrote:
>> hi
>>
>> i used the -num option for g_hbond run. since i new to gromacs i cannot
>> able to interpret the output form. it comes in 3 columns with the first
>> column indicating the frame, i dont know about the remaining two columns
>
> if you use
>
> g_hbond -h it tells you also if you have the legend inside the file (do
> not
> select -noxvgr)
>
> 2: Hydrogen bonds
> 3: Pairs within 0.35nm (depends on your select cutoff radius)
>
>
>
>>
>> Kindly suggest
>>
>> Parthiban & sundar
>>
>> _______________________________________________
>> gmx-users mailing list    gmx-users at gromacs.org
>> http://www.gromacs.org/mailman/listinfo/gmx-users
>> Please search the archive at http://www.gromacs.org/search before
>> posting!
>> Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-users-request at gromacs.org.
>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
>
> greetings,
>
> Florian
>
> --
> -------------------------------------------------------------------------------
>  Florian Haberl
>  Computer-Chemie-Centrum
>  Universitaet Erlangen/ Nuernberg
>  Naegelsbachstr 25
>  D-91052 Erlangen
>  Telephone:  	+49(0) − 9131 − 85 26573
>  Mailto: florian.haberl AT chemie.uni-erlangen.de
> -------------------------------------------------------------------------------

Dear Florian & other users

can you pls. explain me in detail about the 3rd column in the g_hbond
output in -num option

Parthi & sundar