[gmx-users] time of dynamic
Mark.Abraham at anu.edu.au
Mon Dec 1 08:35:04 CET 2008
shahrbanoo karbalaee wrote:
> Dear Justin/mark
> would you please tell me for compare dynamic peptide what time for MD
> is enough by gromacs?generally.
> I think 20ns enough ,what do you think? many people suggest 120ns !!!!
It depends on the properties of your system and what you're trying to
observe. Check the literature for what others have done with systems of
similar size and type measuring the same observables as you. Many
nanoseconds is probably right.
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