[gmx-users] jump peptide

shahrbanoo karbalaee shahrbanoo at gmail.com
Thu Dec 11 08:39:27 CET 2008

Dear Justin/Mark
I have a system with peptide and tfe/spc .I minimized and run for
equilbrate them for 5 ns.when the pr-md was end the time.I saw  the
gromac file  by vmd.the peptide jump from the box .but when I saw ngmx
and choose triclinic ,the peptide was insert in box.I have chosen - bt
 dodecahedron  in my commands.please advise me.


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