[gmx-users] add hydrogen atom in pdb file

nafiseh farhadian na.farhadian at gmail.com
Sun Dec 14 08:40:44 CET 2008

Dear Sir,
i'm one of the new gmx user. i have a problem with gromacs input file.
i'll be thanking if you help me.

i'm working on protein system. i have pdb and itp file. in itp file there
are hydrogen atoms but in pdb file no. so when i define top file the number
of atoms don't match to each other and i get a fattal error. my forcefield
in top file is ''ffgmx forcefield''. i'll be appriciate if you help me.

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