[gmx-users] Hello

Anamika Awasthi aawasthi28 at gmail.com
Tue Feb 12 11:14:36 CET 2008

Dear Gromacs users,
      I am beginner in using using GROMACS and MD simulations, Please help
me in solving my problem.
     I simulate my protein for 5 ns and after simulations RMSD in C-alpha is
showing a big fluctuation after 3 ns and til 3.5  ns to 4.5 ns its fine and
again its showing fluctuation its till 2.5 nm. Please Tell me how should I
analyze this and How can I sort out this problem.

   Thanking you

Anamika Awasthi, PhD
DBT-Postdoctoral Fellow
Laboratory of Structural Biology
Centre for DNA Fingerprinting and Diagnostics (CDFD)
ECIL Road, Nacharam
Hyderabad 500 076
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20080212/10b65775/attachment.html>

More information about the gromacs.org_gmx-users mailing list