[gmx-users] Lennard Jones spheres

[Mark Abraham]

Chiara Parravicini wrote:
> Hi gromacs users,
> 
> I would like to add LJ spheres into the protein cavitities, but I don't 
> know how to define input parameters and files to set the run. Should I 
> define spheres as "dummy atoms"? Any suggestion will be greatly appreciated!

How do you want these spheres to interact with the system?

Mark