[gmx-users] RE: the .mdp format

[Justin A. Lemkul]

Vitaly Chaban wrote:
>> I did not fully understand about this command.
>> Could anyone explain this more?
>> Thanks a lot
>>
>> include:
>> directories to include in your topology. Format:
>> -I/home/john/my_lib -I../more_lib
>>     
>
> This is a directory where your topology files are placed, isn't it?
>
>   

More or less, yes.  By default, Gromacs searches $GMXLIB and the current 
working directory for the necessary topology information.  The "include 
= -I" line can be used to specify the location(s) of other necessary 
topologies.

-Justin

-- 
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Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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