[gmx-users] about itp file making

[Tsjerk Wassenaar]

Hi Anirban,

Might it be of any use, here's a structure/topology of glucose based
on the GROMOS96 53a6 force field.

Hope it helps,

Tsjerk

On Thu, Jul 3, 2008 at 12:44 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
> Use whichever one you think will best represent your molecule.  I think some
> work was done with sugars in G96 45a3, if I'm not mistaken.
>
> -Justin
>
> anirban polley wrote:
>>
>> Hi,
>>     This is first time that I am sending mail so I do not know the where I
>> have to send for proper answer of my question. To make .itp file of a sugar
>> molecule, what should be the gromacs force field (96/opls)?
>> regards
>> Anirban
>> ------------------------------------------------------------------------
>>
>> _______________________________________________
>> gmx-users mailing list    gmx-users at gromacs.org
>> http://www.gromacs.org/mailman/listinfo/gmx-users
>> Please search the archive at http://www.gromacs.org/search before posting!
>> Please don't post (un)subscribe requests to the list. Use the www
>> interface or send it to gmx-users-request at gromacs.org.
>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
> --
> ========================================
>
> Justin A. Lemkul
> Graduate Research Assistant
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
>
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the www interface
> or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>



-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623