[gmx-users] about some question on gromacs

anirban polley polley.anirban at gmail.com
Mon Jul 7 08:44:39 CEST 2008


Hi,
    I have the following questions.
    Are there any other ways to make bilayer other than packmol? I want to
make bilayer (.pdb file).
    I saw that in GROMACS, there is united atom model, then what are the
GROMACS computes in the Deuterium order parameter?
When I run the system for long time, the program suddenly crashes and says
segmentation fault without giving any information for the reasons. Can you
say what the probable reasons are for which the program crashes and says
segmentation fault?
sincerely,
Anirban
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