[gmx-users] make_ndx problem

Justin A. Lemkul jalemkul at vt.edu
Wed Jul 16 14:18:57 CEST 2008

minnale wrote:
> Hi Users,
> I want to do analysis of g_density of lipidbilayer so how can I select 
> po4 and N(CH3)3 groups seperately by using make_ndx from popc.
> Can anyone tell me detail with which options use?
> I have checked in archives that create sn1.ndx and sn2.ndx files but i 
> didnt get celarly.
> Thanks in advance

Type "help" at the make_ndx prompt, and it will print out some examples.  You 
will need to specify the atoms based on their names, and merge these groups 


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Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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