[gmx-users] How to run on MARTINI Force Field in GROMACS

[Justin A. Lemkul]

Using MARTINI is not as automatic as using most of the force fields available 
with Gromacs.  At the MARTINI site, there are several scripts that will generate 
the correct structure and topology files:

http://md.chem.rug.nl/~marrink/MARTINI/Parameters.html

-Justin

Anirban Ghosh wrote:
> Hi ALL,
>  
> I want to run CGMD using MARTINI force field in GROMACS. I request you 
> to kindly explain me how to integrate the MARTINI Force Field in 
> GROMACS. In GROMACS3.3 when we run
> the pdb2gmx command, we get the choice of 9 different force fields, but 
> MARTINI is
> not there. How should integrate it?
>  
> Regards,
> 
>  
>  
> *Anirban Ghosh*
> *M.Tech Bioinformatics*
> *University of Hyderabad*
> 
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-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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