[gmx-users] number of grid cells is zero

David van der Spoel spoel at xray.bmc.uu.se
Sun Jul 27 13:16:20 CEST 2008

N. Sundar Ram wrote:
> Hi everyone,
>              I am a new user of gromacs. I am running MD for a Pleckstrin
> homology domain (100 amino acids) in 8 nodes (32 CPUs). After
> Mdurn i get the following error: "Number of grid cells is
> zero. system is collapsing".
> Though I saw many mails regarding this problem in the mailing list, I
> could not get a proper answer.
> Can anyone please tell me what should I do to get it running.
> Thanking you in advance.
fix the problems in your structure most likely. Did you say homology?
check the wiki.

David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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