[gmx-users] RE: value of d in editconf

[alkasrivastava at iitb.ac.in]

Hi

I am doing a 5 peptide(7 residue) simulation in a 5 nm cubic box. but
during editconf i haven't given the option -d to specify the distance
between the solute and the box. Now some of the atoms of my peptides are
out of the box also is it normal? Does not applying -d is going to effect
in any way.

Thanks
Alka