[gmx-users] RE: value of d in editconf

alkasrivastava at iitb.ac.in alkasrivastava at iitb.ac.in
Thu Jul 31 13:00:05 CEST 2008


I am doing a 5 peptide(7 residue) simulation in a 5 nm cubic box. but
during editconf i haven't given the option -d to specify the distance
between the solute and the box. Now some of the atoms of my peptides are
out of the box also is it normal? Does not applying -d is going to effect
in any way.


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