[gmx-users] secondary structure

Peyman Yamin Peyman.Yamin at cbi.uni-erlangen.de
Tue Jun 10 15:20:15 CEST 2008

At best use all those you need!

Also the manual could help, so could google.com as well as the university 

Be well

On Tuesday 10 June 2008 12:53, s lal badshah wrote:
> Hi All,
> I want to study and calculate the secondary structure as a function of time
> of my MD simulated protein. I have no DSSP installed but will use VMD for
> this.Can any one suggest me which files of MD simulation output I should
> used? or I need to develop PDB file of the whole MD simulation
> trajectories? Hoping for an early guidance
> M.Phil
> NCE in Physical Chemistry,
> University of Peshawar.
> NWFP,Pakistan.
> Cell # 03349060632.
> Send instant messages to your online friends http://uk.messenger.yahoo.com

Peyman Yamin
Lehrstuhl fuer Thermische Verfahrenstechnik
Universitaet Erlangen-Nuernberg
Egerlandstr. 3
91058 Erlangen
Phone: +49(0) - 9131 - 85 27671
Mailto: peyman.yamin at cbi.uni-erlangen.de

More information about the gromacs.org_gmx-users mailing list