[gmx-users] secondary structure

Peyman Yamin Peyman.Yamin at cbi.uni-erlangen.de
Tue Jun 10 15:20:15 CEST 2008


At best use all those you need!

Also the manual could help, so could google.com as well as the university 
library.

Be well


On Tuesday 10 June 2008 12:53, s lal badshah wrote:
> Hi All,
> I want to study and calculate the secondary structure as a function of time
> of my MD simulated protein. I have no DSSP installed but will use VMD for
> this.Can any one suggest me which files of MD simulation output I should
> used? or I need to develop PDB file of the whole MD simulation
> trajectories? Hoping for an early guidance
>
> SYED LAL BADSHAH
> M.Phil
> NCE in Physical Chemistry,
> University of Peshawar.
> NWFP,Pakistan.
> Cell # 03349060632.
>
> Send instant messages to your online friends http://uk.messenger.yahoo.com

-- 
Peyman Yamin
Lehrstuhl fuer Thermische Verfahrenstechnik
Universitaet Erlangen-Nuernberg
Egerlandstr. 3
91058 Erlangen
Phone: +49(0) - 9131 - 85 27671
Mailto: peyman.yamin at cbi.uni-erlangen.de



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