[gmx-users] pressure coupling for self-assembly of bilayer
LeeHwan-kyu
hklee910 at hotmail.com
Fri Jun 13 17:24:07 CEST 2008
Dear GMX-users,
I'm trying to do self-assembly of bilayer. I'm using coarse-grained model (MARTINI), and there are 1280 CG lipids and 30110 CG waters. I followed procedures of Marrink and de Vries's atomistic simulations of the bilayer self-assembly. So, I simulated the randomly-positioned system with isotropic pressures for a while, and then run the system with anisotropic pressure (shown below). I've tried this a couple of times, but I always got tilted multiple bilayers (due to anisotropic pressure, the box x,y,z dimensions become even awkward.). How can I get only one bilayer (normal to z-direction) ? Do I need to apply other pressure couplings? Or, am I using too much water?
Thanks for your help in advance.
best,
Hwankyu.
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tau_p = 0.2 0.2 0.2 0.2 0.2 0.2
compressibility = 3e-5 3e-5 3e-5 3e-5 3e-5 3e-5
ref_p = 1.0 1.0 1.0 1.0 1.0 1.0
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