[gmx-users] topology for c-alpha protein model
nolasco1980 at gmail.com
Fri Jun 20 19:36:19 CEST 2008
After pdb2gmx of the whole structure, make an index file and them run
another pdb2gmx choosing the c-alpha group. I hope it helps.
2008/6/20, Lillian Chong <ltchong42 at gmail.com>:
> Dear Gromacs Users,
> I would like to generate a topology for a protein in which each
> residue is represented only by its C-alpha atom (a Go-type model).
> What would be the most straightforward way of creating this topology
> Thanks in advance,
> gmx-users mailing list gmx-users at gromacs.org
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users