[gmx-users] Protein is moving out of box.

Tsjerk Wassenaar tsjerkw at gmail.com
Fri Jun 27 10:06:16 CEST 2008


Browse the archives, check the wiki.
http://wiki.gromacs.org/index.php/Periodic_Boundary_Conditions

Tsjerk

On Fri, Jun 27, 2008 at 8:06 AM, Bhanu <bhanuiitr at gmail.com> wrote:
> Hi all,
> am new to Gromacs. I tried a 10 ps simulation with a protein and after the
> run, the protein came out of the box.. is it good or bad? How can I keep the
> protein in the box?
> Waiting for ur reply.
>
> Bhanu.
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623



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