[gmx-users] number of coordinates in coordinate file

[David van der Spoel]

s lal badshah wrote:
> Dear all,
> I am trying to do Energy Minimization of a protein.But it gives the 
> following error:
> ERROR: invalid enum 'cut-��off' for variable vdw-type, using 'Cut-off'
> Next time use one of: 'Cut-off' 'Switch' 'Shift' 'User' 'Encad-shift'
> 

your file is broken. maybe non-ascii characters.

> Back Off! I just backed up mdout.mdp to ./#mdout.mdp.1#
> checking input for internal consistency...
> calling /usr/bin/cpp �� the c pre��processor...
> cpp: too many input files
> cpp exit code: 256
> Tried to execute: '/usr/bin/cpp �� the c pre��processor 
> -I/usr/share/gromacs/top -I/usr/share/gromacs/top ��-DPOSRES_SPC 
> 2a5f.top > gromppGMSvC5'
> The '/usr/bin/cpp �� the c pre��processor' command is defined in the 
> .mdp file
> processing topology...
> processing coordinates...
> -------------------------------------------------------
> Program grompp, VERSION 3.3.1
> Source code file: grompp.c, line: 448
> 
> Fatal error:
> number of coordinates in coordinate file (2a5f_b4ion.gro, 23644)
>              does not match topology (2a5f.top, 0)
> What Should I do and how can I remove the input files, as mentioned 
> above that
> cpp: too many input files.
> Regards,
> 
> 
> * SYED LAL BADSHAH
> M.Phil Scholar
> NCE in Physical Chemistry,
> University of Peshawar.
> NWFP,Pakistan.
> Cell # 03349060632. *
> 
> Send instant messages to your online friends http://uk.messenger.yahoo.com
> 
> 
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-- 
David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se