[gmx-users] incorporation of distance restraint into the topology file

[OZGE ENGIN]

Hi all,

I have a question regarding the creating a disulphide bridge. If I want to impose a position restraint on this bond how can I incorporate it into the topology file? It is explained in the manual but the explanation for the last three columns is not clear. I could not decide to put what numbers into these columns.

P.S: I use Gromacs 3.3.1

Thanks in advance
Ozge Engin
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Computational Science & Engineering
Koc University