[gmx-users] trjconv behaving differently in 3.3.3 vs previous versions

[rob yang]

Hi list,
I have a system solvated in dodecahedron box. To visualize it, I used:
trjconv -f system.gro -s system.gro -o visual.pdb -ur compact -pbc whole
Version 3.3.3 gave me a cubic box with broken molecules while the previous versions gave me the right visualization on the same system.gro

Does anybody have any similar experiences? Thanks.

-Rob
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