[gmx-users] selecting residues which are within cutoff distances

[maria goranovic]

Hello Folks,

I have a protein trajectory to analyze. The goal is to find all residues
within a 6 Angstrom radius of another residue, and list their names (for
example) over a trajectory. How can one do this ? I tried using g_mdmat.
However, the eps generated by using xps2pm does not really convey too much
perhaps because of bad resolution ?

Is there any other way ?

Thank you in advance

-Maria
-- 
Maria G.
Technical University of Denmark
Copenhagen
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