[gmx-users] SGI installation problem

[Siavoush Dastmalchi]

Hi,
 
Thanks for the suggestion and I am sorry that didn't let the list know that the problem had been fixed. (I haven't used the mdrun yet, but the other stuff seems working) Thanks to the Makefile that I have received from David. I compared that file with the one created in the script directory and then did some changes to it, and it worked for me. I need to add that I tried couple of times starting from ./configuration step. I was also getting the same error while trying the "make distclean". It is funny, but true though that the Makefile that I used finally in the script directory is a hybrid created under Sgi and Mac, but did work.
 
Once again thanks for your concerns.
 
Cheers, Siavoush

________________________________

From: gmx-users-bounces at gromacs.org on behalf of Erik Lindahl
Sent: Wed 2008/03/19 12:39 ب.ظ
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] SGI installation problem



Hi,

I'm not quite sure what David was thinking, but Makefiles are created 
on-the-fly with automake/autoconf and tailored to the commands on your 
system, so there is absolutely no way a Mac makefile will work on an 
SGI :-)

An error like

make: file 'Makefile' line 417: syntax error
*** Error code 1 (bu21)

typically means you've edited the makefile manually, or moved the 
source. Try a "make distclean" and start over from scratch with ./
configure!

Cheers,

Erik



On Mar 16, 2008, at 3:16 PM, Siavoush Dastmalchi wrote:
> Hi David,
>
> I did as following and still getting the same error:
>
> % make -f scripts/Makefile
>
> There are some minor differences (apart from those related to the 
> specifications and paths in my system) between the file that you 
> sent me and the one in the script directory. May be the way that I 
> trying to use the Makefile in the script directory is not OK. Do I 
> need to do configuration step again and then use the scripts/Makefile?
> I have attached the Makefile in the script directory just in case.
>
> Regards, Siavoush
>
>
> ________________________________
>
> From: gmx-users-bounces at gromacs.org on behalf of David van der Spoel
> Sent: Sun 2008/03/16 05:07 ب.ظ
> To: Discussion list for GROMACS users
> Subject: Re: [gmx-users] SGI installation problem
>
>
>
> Siavoush Dastmalchi wrote:
>> Hi,
>> As I mentioned before, the installation stopped with the error 
>> shown below.
>> Looking for your kind attentions.
>> Cheers, Siavoush
>>
>> Making all in contrib
>> Making all in admin
>> Making all in scripts
>> make: file 'Makefile' line 417: syntax error
>> *** Error code 1 (bu21)
>>
>>
> Try this Makefile in the scripts directory.
>
> --
> David van der Spoel, Ph.D.
> Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala 
> University.
> Box 596, 75124 Uppsala, Sweden. Phone:  +46184714205. Fax: 
> +4618511755.
> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://folding.bmc.uu.se <http://folding.bmc.uu.se/>  
> <http://folding.bmc.uu.se/>
>
>
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------------
Erik Lindahl   <lindahl at cbr.su.se>  Backup: <erik.lindahl at gmail.com>
Assistant Professor, Computational Structural Biology
Center for Biomembrane Research, Dept. Biochemistry & Biophysics
Stockholm University, SE-106 91 Stockholm, Sweden
Tel: +46(0)8164675  Mobile: +46(0)704218767  Fax: mail a PDF instead




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