[gmx-users] H Atom type modification of POPC and double pair
sudheer babu
sudheer.pbm07 at gmail.com
Fri Mar 28 13:01:09 CET 2008
Hi all,
Thanks for the response to Mr.Justin and Mr.Chris
I calculated the sigma and epsilon values in the way Justin mentioned
the values are
;name name charge mass charge ptype sigma epsilon
LO LO 1 15.9994 0.000 A 0.295999914
0.878694594 ;carbonyl O, OPLS
LOM LOM 1 15.9994 0.000 A 0.295999914
0.878694594 ;carboxyl O, OPLS
LNL LNL 1 14.0067 0.000 A 3.35300e-03
3.95100e-06 ;Nitrogen, OPLS
Then in First step of procedure, suggested that add atom type H from
opls_369 to match H expected by pope.itp
In archives this type of problem posted for pope type of lipids
opls_369 H 1 1.008 0.400 A 0.0000e+00 0.0000e+00
Im using POPC type of lipid
I want to ask two things
1. How can modify H atom type in popc.itp file
2. Mr. Chris mentioned that Parameters require a double pairs section, how
can I mention?
Pls give me detail explanation
all comments will be appreciated
Thanks in advance
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