[gmx-users] A question about DNA and normal mode analysis in gromacs

[Mark Abraham]

silvester.thu wrote:
> Dear all
> I have the same question as I have encountered a serious problem when I 
> was doing NM. So I am wondering that whether someone has an example 
> going through all the steps of NM successfully. And can you mail me the 
> parameter files?

I suggest you start with http://wiki.gromacs.org/index.php/Tutorials and
http://wiki.gromacs.org/index.php/normal_mode_analysis

Mark