[gmx-users] Force constant defined in flexible TIP3P water model
Changsun Eun
thinkwhy at email.unc.edu
Sun May 25 01:52:13 CEST 2008
Dear Gromacs Users,
I have a simple question about the force constants of flexible TIP3P
water model defined in Gromacs and Amber. Simply, I compared the force
constants for the bonded interaction between oxygen and hydrogen of
water and I realized that they seemed to be different (although the
equilibrium bond length and bond angles are the same as 0.09572 nm and
104.52 degree, respectivley) The force constant defined in Amber
(para99.dat or gaff.dat) is 553.0 kcal/mol/(Angstrom^2), which is
equivalent to 462750 (=553.0*2*4.184*100) kJ/mol/(nm^2) for Gromacs
format, while the actual force constant in Gromacs (tip3p.itp) is 502416
kJ/mol/(nm^2).
I am just wondering why they are different. Did I make a stupid mistake
in this comparison or does this difference not matter in defining
flexible TIP3P water model? Also, could you anyone explain how they got
these numbers from the original TIP3P model?
Thank you very much for your help.
Changsun Eun
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