[gmx-users] Generate velocity frame

[Justin A. Lemkul]

Trajectories in .xtc format do not contain velocities or forces.  For general
reference, see here:

http://www.gromacs.org/documentation/reference/online/files.html

-Justin

Quoting Collins Nganou <nganoucollins at gmail.com>:

> Dear gmx-users.
>
> Greetings. someone can explain me how can I do to correct the following
> missing:
>
> Last frame         50 time -20835.531
> No frames found for average velocity, will not write veloc.pdb
> No frames found for average force, will not write force.pdb
>
>  g_traj_d -f eigenvec.xtc -s 3ns.tpr -n index.ndx -ox coord.xvg -ov
> veloc.xvg -ot temp.xvg -ekt ektrans.xvg -ekr ekrot.xvg -cv veloc.pdb -cf
> force.pdb -vd veldlist.xvg
>



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Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul at vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/

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