[gmx-users] Re: Sorry

[Justin A. Lemkul]

Alif M Latif wrote:
> Hello,
>  
> I have a suggestion, why don't you try building your HOME-MADE molecules 
> using PRODRG webserver, it is specially for protein-related molecules, 
> but such structure like those involving hydrocarbon chains can be made 
> by this webserver. This server provide topologies for GROMACS.
>  

A good idea, just keep in mind the usual caveats - the charges and charge groups 
assigned by PRODRG often require refinement.

-Justin

> Good luck with your research!
>  
> Muhammad Alif Mohammad Latif
> 
> 
> Department of Chemistry
> Faculty of Science
> Universiti Putra Malaysia
> 43400 UPM Serdang, Selangor
> MALAYSIA
> 
> 
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-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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