[gmx-users] can't find "distclean"
sarbani_c84 at rediffmail.com
Thu Nov 6 10:38:44 CET 2008
I am facing a peculiar problem and may sound stupid, but I need help.
We have a 10.4.1. Mac Os X machine with 2 dual core processors.
I had downloaded gromacs 3.3.2 and installed it in this computer using "installer". It added
the "gromacs " directory into " "/usr/loca/" directory.
I want to run gromacs in parallel, using all the 4 processors. I downloaded the lam 7.0.6
package from gromacs homepage and installed it as per the instructions.
The host file that I ceated was /private/etc/lamhost and it read
The command lamboot -v /private/etc/lamhost gave the following message
n-1<291> ssi:boot:base:linear: booting n0 (mac-pros-computer.local)
n-1<291> ssi:boot:base:linear: finished
But checking with the command "mpirun C ls -al " gives the message
It seems that [at least] one of the processes that was started with
mpirun did not invoke MPI_INIT before quitting (it is possible that
more than one process did not invoke MPI_INIT -- mpirun was only
notified of the first one, which was on node n-1073743224).
mpirun can *only* be used with MPI programs (i.e., programs that
invoke MPI_INIT and MPI_FINALIZE). You can use the "lamexec" program
to run non-MPI programs over the lambooted nodes.
I need to recompile gromacs or at least "mdrun" for parallel run giving the command "-
enable_mpi"on make file, but I can't find the " make" file or the "configure" script anywhere.
The /usr/local/gromacs dir has
bin/ include/ lib/ share/
In the share/gromacs/template directory there is Makefile.i386-apple-darwin8.10.1.
I don't know how to proceed. Any suggestion will be highly helpful.
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users